Wilson disease is a disorder of copper transport, resulting in neurolo
gical and hepatic damage due to copper toxicity. We have recently iden
tified >20 mutations in the copper-transporting ATPase defective in th
is disease. Given the difficulties of searching for mutations in a gen
e spanning >80 kb of genomic DNA, haplotype data are important as a gu
ide to mutation detection. Here we examine the haplotypes associated w
ith specific mutations. We have extended previous studies of DNA haplo
types of dinucleotide-repeat polymorphisms (CA repeats) in the Wilson
disease region to include an additional marker, in 58 families. These
haplotypes, combining three markers (D13S314, D13S316, and D13S301), a
re usually specific for each different mutation, even though highly po
lymorphic CA repeat markers have been used. Haplotypes, as well as the
ir accompanying mutations, differ between populations, In the patients
whom we have studied, the haplotype data indicate that as many as 20
mutations may still be unidentified. The use of the haplotypes that we
have identified provides an important guide for the identification of
known mutations and can facilitate future mutation searches.