Time-resolved cryoelectron microscopy reveals the first step in the co
nformational changes that enable membrane fusion in Semliki Forest vir
us. The neutral pH structure reveals a central cavity within the spike
complex, plate-like extensions forming a layer above the membrane, an
d the paths of the paired transmembrane domains connecting the trimeri
c spikes and pentamer-hexamer clustered capsid subunits. Low pH treatm
ent results in centrifugal movement of E2, the receptor-binding subuni
t, centripetal movement of E1 to narrow the central cavity initiating
the formation of an E1 trimer, and the extension of the E1 fusion sequ
ence toward the target membrane.