In order for an infection to occur, the target organ must come in cont
act with sufficient microbes, the microbe must possess specific virule
nce factors, these virulence factors must be expressed, and the defens
es of the organ system must be overcome. This dynamic process, which i
s ongoing in all living entities, can be described by the following re
lationship: Infection proportional to [Number of Microbes]x[Virulence
Characteristics]/Immune Status of the Host The establishment of infect
ion first occurs in a particular organ. This phenomenon is known as ti
ssue trophism and the association of microbes with organ systems gover
ns the practice of clinical microbiology and infectious disease. With
some microbes (e.g., Giardia, Cryptosporidium) the interaction with th
e particular organ is so specific that infections are almost always co
nfined to one site; with others (e.g., Salmonella, enterovirus) the mi
crobe has the potential to become systemic. When attempting to establi
sh health risk assessment from microbes by contact with food and drink
ing water, one must therefore consider that the gastrointestinal tract
is a complex organ system with a variety of specific host defense mec
hanisms. It is only when the microbe has particular virulence factors
for sites in gastrointestinal tract, and the specific host defense mec
hanisms in the gastrointestinal tract are breached, that infection of
this organ system occurs. Therefore, the general terms ''immunosuppres
sion'' or ''immunocompromise'' are meaningless unless the specific imm
une defect is known. A description of the microbial virulence factors
active against the gastrointestinal tract and the defense mechanisms o
f this organ system are reviewed to provide a biological basis health
risk assessment and future food and drinking water regulations.