Yellow-head virus (YHV) causes acute infections in Penaeus monodon tha
t result in very high mortality. First reports of the virus suggested
that the viral core consisted of DNA and that the virus should be clas
sified as a granulosis-type baculovirus. However, 3 attempts at DNA ex
traction with high concentrations of purified virus (verified by trans
mission electron microscopy, TEM) gave only traces of DNA, which could
not be visualized by ethidium bromide staining of agarose electrophor
esis gels. Although selected recombinant clones derived from these poo
led DNA traces did not hybridize with host shrimp DNA, they also faile
d to react with YHV-infected tissue by the in situ DNA hybridization t
echnique. Furthermore, negatively stained virions of YHV viewed by TEM
were atypical for baculoviruses and viral assembly is cytoplasmic. Th
erefore, renewed attempts to extract nucleic acid from purified YHV pr
eparations focused on RNA rather than DNA. Hemolymph was collected ase
ptically by syringe from 200 artificially YHV-infected, Live shrimp in
terminal stages of the disease. Purified virions were prepared by a p
rogram of centrifugation culminating in 22% to 45% Urografin gradient
ultracentrifugation. A band at the 30-37% interval of the gradient gav
e the cleanest preparation with the highest quantity of virions. By TE
M these were enveloped, measured 150-170 x 40-50 nm and were surrounde
d by a fringe of knob-like projections approximately 11 nm in length.
Nucleic acid was extracted using guanidium thiocyanate and purified by
CsCl gradient ultracentrifugation. High-molecular-weight nucleic acid
was obtained which was degraded by RNase-A but not by DNase I. Based
on morphology of negatively stained virions by TEM and on RNA content,
YHV resembles rhabdoviruses or coronaviruses, rather than baculovirus
es. This is an important discovery, since it necessitates cDNA prepara
tion in the process to develop a nucleic-acid probe for YHV detection
by the in situ or dot blot hybridization techniques.