In S. cerevisiae, mitochondrial DNA (mtDNA) molecules, in spite of the
ir high copy number, segregate as if there were a small number of heri
table units. The rapid segregation of mitochondrial genomes can be ana
lyzed using mtDNA deletion variants. These small, amplified genomes se
gregate preferentially from mixed zygotes relative to wild-type mtDNA.
This segregation advantage is abolished by mutations in a gene, MGT1,
that encodes a recombination junction-resolving enzyme. We show here
that resolvase deficiency causes a larger proportion of molecules to b
e linked together by recombination junctions, resulting in the aggrega
tion of mtDNA into a small number of cytological structures. This chan
ge in mtDNA structure can account far the increased mitotic loss of mt
DNA and the altered pattern of mtDNA segregation from zygotes. We prop
ose that the level of unresolved recombination junctions influences th
e number of heritable units of mtDNA.