P. Jewsbury et T. Kitagawa, DISTAL RESIDUE CO INTERACTION IN CARBONMONOXY MYOGLOBINS - A MOLECULAR-DYNAMICS STUDY OF 3 DISTAL MUTANTS, Biophysical journal, 68(4), 1995, pp. 1283-1294
Six 90-ps molecular dynamics trajectories, two for each of three dista
l mutants of sperm whale carbonmonoxy myoglobin, are reported; solvent
waters within 16 Angstrom of the active site nave been included In bo
th His64Gln trajectories, the distal side chain remains part of the he
me pocket, forming a ''closed'' conformation similar to that of the wi
ld type 64N(delta)H tautomer. Despite a connectivity more closely rese
mbling the NepsilonH histidine tautomer, close interactions with the c
arbonyl ligand similar to those observed for the wild type 64N(epsilon
)H tautomer are prevented in this mutation by repulsive interactions b
etween the carbonyl O and the 64O(epsilon). The aliphatic distal side
chain of the His64Leu mutant shows little interaction with the carbony
l ligand in either His64Leu trajectory. Solvent water molecules move i
nto and out the active site in the His64Gly mutant trajectories; durin
g all the other carbonmonoxy myoglobin trajectories, including the wil
d type distal tautomers considered in an earlier work, solvent molecul
es rarely encroach closer than 6 Angstrom of the active site. These re
sults are consistent with a recent structural interpretation of the wi
ld type infrared spectrum, and the current reinterpretation that the d
istal-ligand interaction in carbonmonoxy myoglobin is largely electros
tatic, not steric, in nature.