TESTING BR PHOTOCYCLE KINETICS

An improved K absorption spectrum in the visible is obtained from prev ious photocycle data for the D96N mutant of bacteriorhodopsin, and the previously obtained M absorption spectrum in the visible and the frac tion cycling are confirmed at 25 degrees C. Data at lower temperatures are consistent with negligible temperature dependence in the spectra from 5 degrees C to 25 degrees C. Detailed analysis strongly indicates that there are two intermediates in addition to the first intermediat e K and the last intermediate M. Assuming two of the intermediates hav e the same spectrum and using the L spectrum obtained previously, the best kinetic model with four intermediates that fits the time course o f the intermediates is rather unusual, with two L's on a cul-de-sac. H owever, a previously proposed, more conventional model with five inter mediates, including two L's with the same spectra and two M's with the same spectra, also fits the time course of the intermediates nearly a s well. A new criterion that tests an individual proposed spectrum aga inst data is also proposed.