In Drosophila, Engrailed is a nuclear regulatory protein with essentia
l roles in embryonic segmentation and in normal development of posteri
or compartments. One of its regulatory targets appears to be polyhomeo
tic (ph), a Polycomb group gene. We observed, by immunostaining, that
Engrailed protein binds to the site of the polyhomeotic locus in regio
n 2D of polytene chromosomes. The same analysis carried out on a trans
genic line containing one copy of a P(ph-lacZ) construct shows an addi
tional Engrailed-binding site at the location of the insert. In vivo,
polyhomeotic depends on engrailed function in germ-band-elongated embr
yos, when engrailed and polyhomeotic genes are expressed in similar pa
tterns. By in vitro immunoprecipitations and gel shift assays, we iden
tified two classes of high affinity Engrailed-binding sites upstream o
f each of the two polyhomeotic transcription units. DNA fragments cont
aining these sites were also immunoprecipitated from embryonic UV cros
slinked chromatin in presence of anti-Engrailed antibody. These result
s suggest that polyhomeotic activation in germ-band-elongated embryos
could be mediated by Engrailed-binding to these sites.