The pea aphid Acyrthosiphon pisum has been established in North Americ
a for at least a century and occurs on a broad range of host plants. D
espite its importance as a crop pest, there is little understanding of
the genetic structure of its populations or the extent of genetic div
ergence associated with different host plant utilization. This study e
xamined the extent of mitochondrial DNA (mtDNA) diversity among 35 clo
nes of pea aphids from alfalfa. Polymorphisms were detected at only 2
of 126 restriction sites, suggesting the same impoverished level of ge
netic diversity found in prior allozyme studies. However, length varia
tion was common and apparently arose as a result of tandem repeats in
two regions of the mtDNA molecule. Region 1 occurred in proximity to t
he control region of the molecule, while region 2 was close to a clust
er of tRNA genes flanking the NAD-dehydrogenase subunit 3 gene on the
opposite side of the mtDNA molecule. Each of the aphid clones was homo
plasmic for a single length variant in region 1, which varied with res
pect to the number of copies of a 120-bp repeat. By contrast, one-thir
d of the clones were heteroplasmic at region 2, where they possessed a
variable number of copies of a 210-bp repeat. Reanalysis of clones af
ter 30 generations of parthenogenetic reproduction established the sta
bility of length variants over this interval, suggesting their value i
n studies of the genetic structure of aphid populations.