In a preliminary genome scan of 47 bipolar disorder families, we detec
ted in one family a lod score of 3.41 at the PFKL locus on chromosome
21q22.3. The lod score is robust to marker allele frequencies, phenoco
py rates and age-dependent penetrance, and remains strongly positive w
ith changes in affection status. Fourteen other markers in 21q22.3 wer
e tested on this family, with largely positive lod scores. Five of the
other 46 families also show positive, but modest lod scores with PFKL
. When all 47 families are analysed together, there is little support
for linkage to PFKL under homogeneity or heterogeneity using lod score
analysis, but the model-free affected-pedigree-member method yields s
tatistically significant results (p<0.0003). Our results are consisten
t with the presence of a gene in 21q22.3 predisposing at least one fam
ily to bipolar disorder.