We examine the problem of factoring a positive invertible operator in
an AF C-algebra as T*T for some invertible operator T with both T and
T-1 in a triangular AF subalgebra. A factorization theorem for a cert
ain class of positive invertible operators in AF algebras is proven. H
owever, we explicitly construct a positive invertible operator in the
CAR algebra which cannot be factored with respect to the 2(infinity) r
efinement algebra. Our main result generalizes this example, showing t
hat in any AF algebra, there exist positive invertible operators which
fail to factor with respect to a given triangular AF subalgebra. We a
lso show that in the context of AF algebras, the notions of having a f
actorization and having a weak factorization are the same.