In higher plants, the root-shoot axis established during embryogenesis
is extended and modified by the development of primary and lateral ap
ical meristems. While the structure of several shoot apical meristems
has been deduced by combining histological studies with clonal analysi
s, the application of this approach to root apical meristems has been
limited by a lack of visible genetic markers. We have tested the feasi
bility of using a synthetic gene consisting of the maize transposable
element Activator(Ac) inserted between a 35S CaMV promoter and the cod
ing region of a beta-glucuronidase (GUS) reporter gene as a means of m
arking cell lineages in roots. The GUS gene was activated in individua
l cells by Ac excision, and the resulting sectors of GUS-expressing ce
lls were detected with the histochemical stain X-Gluc. Sectors in late
ral roots originated from both Ac excision in meristematic cells and f
rom parent root sectors that bisect the founder cell population for th
e lateral root initial. Analysis of root tip sectors confirmed that th
e root cap, and root proper have separate initials. Large sectors in t
he body of the lateral root encompassed both cortex and vascular tissu
es. The number of primary initial cells predicted from the size and ar
rangement of the sectors observed ranged from two to four and appeared
to vary between roots. We conclude that transposon-based clonal analy
sis using GUS expression as a genetic marker is an effective approach
for deducing the functional organization of root apical meristems.