Autoantibodies are a hallmark of systemic rheumatic diseases, organ-sp
ecific autoimmune diseases and paraneoplastic syndromes. Cell biologis
ts have used autoantibodies as probes to define the structure and func
tion of novel macromolecules and to determine the chromosomal location
of their respective genes. The observation that many autoantibodies a
ppear before the clinical expression of disease suggests that they are
not epiphenomena. Some autoantibodies are disease-specific markers an
d are an aid to establishing a diagnosis. Although it has been difficu
lt to link autoantibodies to pathogenesis, they can be used to predict
disease progression and outcome. For example, autoantibodies directed
against topoisomerase I are associated with progression of scleroderm
a to diffuse skin involvement and severe systemic disease, whereas ant
ibodies to centromere proteins predict a more slowly progressive disea
se and development of a limited variant of scleroderma. Certain models
of autoantibody production hold promise of a clearer understanding of
the mechanisms that underlie autoimmunity. Drugs such as procainamide
and hydralazine induce the production of chromatin autoantibodies. Ex
posure to heavy metals (e.g., mercury) is also linked to the developme
nt of autoantibodies. The data provide evidence that the autoimmune re
sponse is driven by autoantigens, which are multimolecular complexes i
nvolved in essential cellular functions.