Protease-resistant prion protein, total prion protein, and glial fibri
llary acidic protein were measured in various brain regions from 9 sub
jects with fatal familial insomnia. Six were homozygotes methionine/me
thionine at codon 129 (mean duration, 10.7 +/- 4 months) and 3 were he
terozygotes methionine/valine (mean duration, 23 +/- 11 months). In al
l subjects, protease-resistant prion protein was detected in gray matt
er but not in white matter and peripheral organs. Its distribution was
more widespread than that of the histopathological lesions, which wer
e observed only in the presence of a critical amount of the abnormal p
rotein. In the mediodorsal thalamic nucleus, however, a severe neurona
l loss and astrogliosis were associated with relatively moderate amoun
ts of protease-resistant prion protein, suggesting a higher vulnerabil
ity. There was no overall correlation between amount of protease-resis
tant prion protein and either glial fibrillary acidic protein or total
prion protein. While protease-resistant prion protein was virtually l
imited to subcortical areas and showed a selective pattern of distribu
tion in the subjects with disease of the shortest duration, it was mor
e widespread in the subjects with a longer clinical course, indicating
that with time the disease process spreads within the brain. The kine
tics of the accumulation of protease-resistant prion protein varied am
ong different brain regions: While in the neocortex and to a lesser ex
tent in the limbic lobe and in the caudate nucleus, the amount increas
ed with disease duration, in the mediodorsal, thalamic nucleus and in
the brainstem it was present in comparable amounts in all subjects reg
ardless of the disease duration. These findings indicate that in fatal
familial insomnia, the pathological phenotype is the result of the va
riability, in different brain regions, of the (1) timing and rate of a
ccumulation of protease-resistant prion protein, and (2) vulnerability
to the presence of protease-resistant prion protein.