We have identified a Xenopus cDNA, XS-2, by screening a Xenopus embryo
nic stage-22-24 cDNA library with a DNA probe encoding the transmembra
ne and cytoplasmic domains of mouse syndecan 1. The 1.4 kb cDNA consis
ts of an open reading frame of 642 nucleotides encoding a protein of 1
91 amino acids. The predicted protein of 20869 Da contains a 25-amino
acid putative transmembrane domain and a 32-amino acid putative cytopl
asmic domain, both of which are highly similar to the corresponding re
gions of rat syndecan 2 (92 % identity) and to a lesser degree those o
f rat syndecans 1, 3 and 4 (62, 64 and 78 % respectively). The putativ
e N-terminal ectodomain contains a possible attachment site for hepara
n sulphate, identical with the comparable glycosaminoglycan-attachment
sequence of rat syndecan 2. Polyclonal antisera raised against recomb
inant ectodomain of XS-2, expressed as a fusion protein, recognized a
heparan sulphate proteoglycan in XTC-cell-culture medium. This proteog
lycan bound to DEAE-Sephacel and was eluted with 1M NaCl; digestion wi
th heparitinase but not chondroitinase ABC resulted in the identificat
ion of a 46 kDa protein by these antisera. Northern-blot analysis indi
cated that XS-2 identifies two Xenopus mRNA species approx, 4 and 2 kb
in size in embryos ranging in maturation from the 64-cell stage to st
age 54. These results demonstrate that a heparan sulphate proteoglycan
, similar to syndecan 2, is expressed during Xenopus embryogenesis.