The inhA gene has been recently shown to encode a common protein targe
t for isoniazid and ethionamide action in Mycobacterium tuberculosis.
In this paper, we demonstrate that the M. tuberculosis InhA protein ca
talyzes the NADH-specific reduction of 2-trans-enoyl-ACP, essential fo
r fatty acid elongation. This enzyme preferentially reduces long-chain
substrates (12-24 carbons), consistent with its involvement in mycoli
c acid biosynthesis. Steady-state kinetic studies showed that the two
substrates bind to InhA via a sequential kinetic mechanism, with the p
referred ordered addition of NADH and the enoyl substrate. The chemica
l mechanism involves stereospecific hydride transfer of the 4S hydroge
n of NADH to the C-3 position of the 2-trans-enoyl substrate, followed
by protonation at C-2 of an enzyme-stabilized enolate intermediate. K
inetic and microcalorimetric analysis demonstrates that the binding of
NADH to the S94A mutant InhA, known to confer resistance to both ison
iazid and ethionamide, is altered. This difference can account for the
isoniazid-resistance phenotype, with the formation of a binary InhA-N
ADH complex required for drug binding. Isoniazid binding to either the
wild-type or S94A mutant InhA could not be detected by titration micr
ocalorimetry, suggesting that this compound is a prodrug, which must b
e converted to its active form.