A new approach, bio-affinity characterization mass spectrometry (BACMS
), aimed at providing a more rapid, sensitive and potentially more fle
xible alternative to techniques presently employed for the characteriz
ation of noncovalent interactions in mixtures, such as would be encoun
tered in combinatorial chemistry, is presented, BACMS avoids some of t
he difficulties and potential artifacts associated with affinity chrom
atography since the noncovalent associations occur in solution; thus,
BACMS avoids the requirement of solid support media and the developmen
t of non-interfering linker species. This paper describes the conceptu
al basis for the methodology and its potential use in applications whi
ch include the screening of high affinity ligands in support of new dr
ug development. BACMS exploits new Fourier-transform ion cyclotron res
onance (FTICR) mass spectrometry technologies which, when coupled to e
lectrospray ionization (ESI), allow the investigation of specific nonc
ovalent complexes formed in solution. BACMS utilizes the well-known at
tributes of FTICR, such as the high resolution mass analysis and (MS)(
n) (n greater than or equal to 2) capabilities; however, it is even mo
re directly a result of recently developed techniques involving quadru
polar excitation, such as selected-ion accumulation. These tools are d
emonstrated and the results illustrate the extraordinary sensitivity a
chievable (solution concentrations of 1x10(-9) M without the use of se
parations prior to ESI). Thus, the new capabilities demonstrated here,
in conjunction with ESI, will be useful for the investigation of very
low relative concentration noncovalent association directly from solu
tion, and promote a faster alternative for combinatorial mixture scree
ning and analysis.