Molten globules are thought to be general intermediates in protein-fol
ding. Apparently conflicting studies have failed to clarify whether on
e of the best characterized molten globules, that of alpha-lactalbumin
, resembles an expanded native-like protein or a nonspecific collapsed
polypeptide. Here we show that the molten globule properties of alpha
-lactalbumin are largely confined to one of its two domains. The alpha
-helical domain forms a helical structure with a native-like tertiary
fold, while the beta-sheet domain is largely unstructured. Molten glob
ules thus possess a native-like backbone topology, but this topology d
oes not necessarily encompass the entire polypeptide chain. Our studie
s indicate that molten globules provide an approximate solution to, an
d considerable simplification of the protein folding problem.