Rw. Strange et al., THE SUBSTRATE-BINDING SITE IN CU NITRITE REDUCTASE AND ITS SIMILARITYTO ZN CARBONIC-ANHYDRASE, Nature structural biology, 2(4), 1995, pp. 287-292
Here we investigate the structure of the two types of copper site in n
itrite reductase from Alcaligenes xylosoxidans, the molecular organisa
tion of the enzyme when the type-2 copper is absent, and its mode of s
ubstrate binding. X-ray absorption studies provide evidence for a four
th ligand at the type-2 Cu, that substrate binds to this site and indi
cates that this binding does not change the type-1 Cu centre. The subs
trate replaces a putative water ligand and is accommodated by a length
ening of the Cu-histidine bond by approximately 0.08 Angstrom. Modelli
ng suggests a similarity between this unusual type-2 Cu site and the Z
n site in carbonic anhydrase and that nitrite is anchored by hydrogen
bonds to an unligated histidine present in the type-2 Cu cavity.