C. Damblon et al., BREAKDOWN OF THE STEREOSPECIFICITY OF DD-PEPTIDASES AND BETA-LACTAMASES WITH THIOLESTER SUBSTRATES, Biochemical journal, 309, 1995, pp. 431-436
With peptide analogues of their natural substrates (the glycopeptide u
nits of nascent peptidoglycan), the DD-peptidases exhibit a strict pre
ference for D-Ala-D-Xaa C-termini. Gly is tolerated as the C-terminal
residue, but with a significantly decreased activity. These enzymes we
re also known to hydrolyse various ester and thiolester analogues of t
heir natural substrates. Some thiolesters with a C-terminal leaving gr
oup that exhibited L stereochemistry were significantly hydrolysed by
some of the enzymes, particularly the Actinomadura R39 DD-peptidase, b
ut the strict specificity for a D residue in the penultimate position
was fully retained. These esters and thiolesters also behave as substr
ates for beta-lactamases. In this case, thiolesters exhibiting L stere
ochemistry in the ultimate position could also be hydrolysed, mainly b
y the class-C and class-D enzymes. However, more surprisingly, the cla
ss-C Enterobacter cloacae P99 beta-lactamase also hydrolysed thioleste
rs containing an L residue in the penultimate position, sometimes with
a higher efficiency than the D isomer.