We have determined the three-dimensional structure of the flagellar ap
paratus in Prorocentrum micans Ehrenberg (Dinophyceae). The flagellar
apparatus consists of two basal bodies that lie at approximately a 35
degrees angle to one another. Each basal body bears a typical dinophyc
ean complement of microtubular and fibrous components. Unlike the majo
rity of Dinophyceae, the longitudinal microtubular root lies adjacent
to the longitudinal basal body and abuts the transverse basal body. Th
e transverse microtubular root is associated with an extension of micr
otubules that is directed posteriorly (dorsal, using proposed terminol
ogy) into the cell to a region adjacent to the nucleus. On the opposit
e side of the flagellar apparatus, the microtubules of the peduncle ex
tend posteriorly (dorsal, using proposed terminology) from the flagell
ar canal region. The microtubules extend for several micrometers and t
he peduncle is closely associated with a complex striated collar that
circumscribes the flagellar canal and its components. We report on the
three-dimensional nature of the flagellar canal and accessory pore ca
nal region. We conclude that the flagellar canal and accessory pore ca
nal are not attached to each other and that the 'Prorocentrum' type of
flagellar apparatus and cell architecture is most likely the result o
f episome/hyposome compression.