CRUSTACEANS and insects share a common origin of segmentation(1,2), bu
t the specialization of trunk segments appears to have arisen independ
ently in insects and various crustacean subgroups(3'4). Such macroevol
utionary changes in body architecture may be investigated by comparati
ve studies of conserved genetic markers(5-7). The Hox genes are well s
uited for this purpose, as they determine positional identity along th
e body axis in a wide range of animals. Here we examine the expression
of four Hox genes in the branchiopod crustacean Artemia franciscana,
and compare this with Hox expression patterns from insects. In Artemia
the three 'trunk' genes Antp, Ubx and abdA are expressed in largely o
verlapping domains in the uniform thoracic region, whereas in insects
they specify distinct segment types within the thorax and abdomen. Our
comparisons suggest a multistep process for the diversification of th
ese Hox gene functions, involving early differences in tissue specific
ity and the later acquisition of a role in defining segmental differen
ces within the trunk. We propose that the branchiopod thorax may be ho
mologous to the entire pregenital (thoracic and abdominal) region of t
he insect trunk.