The chloride channel gene, CLCN4, has been previously mapped to the X
chromosome in humans. We isolated a cDNA clone for mouse Clcn4 and use
d this to map the gene in an interspecific backcross. This revealed th
e surprising finding that the gene maps to the X chromosome in Mus spr
etus but to chromosome 7 in C57BL/6 mice. This is the first example of
a gene that contravenes Ohno's law - it is a gene unique to the X chr
omosome in one eutherian species but autosomal in another. The consequ
ence of this chromosomal rearrangement is that the gene is lost by men
delian segregation in a subset of the male progeny of a (C57BL/6 x Mus
spretus) x Mus spretus backcross.