We have performed in situ hybridization (ISH) studies predominantly on
paraffin sections and on isolated nuclei of 22 pediatric germ cell tu
mors (GCTs) from 18 patients including 4 recurrences from three patien
ts. In addition, we performed conventional cytogenetic analyses in thr
ee tumor samples. Because reports on cytogenetic studies in pediatric
GCTs are scarce we focused our studies on those chromosome abnormaliti
es frequently observed in adult GCTs. These included numeric and struc
tural abnormalities of chromosomes 1 and 12 (e.g. isochromosome 12p) a
nd numeric deviations of chromosomes 8, 10, X and Y. The histological
subsets of the tumors investigated included two dysgerminomas (DGE), o
ne seminoma (SE), one combined seminoma, two embryonal carcinomas (EC)
, two recurrent ECs, six pure yolk sac tumors (YST), five combined ter
atomas, one immature teratoma (IT) and two recurrences of IT, and thre
e differentiated teratomas (TD). Similar to the GCTs in adults, additi
onal copies of chromosome 12 were the most frequently observed numeric
abnormalities. The analysis of two paraffin-embedded tumors suggested
that changes in the size of the pericentromeric hybridization signals
of chromosome 12 may be attributed to the presence of i(12)(p10). Thi
s was confirmed following the karyotype analysis of one EC which unequ
ivocally revealed the presence of two i(12)(p10). Interestingly, using
these probes, no chromosomal abnormalities were found in the pure TD
or in the TD cells of mixed tumors containing a YST component. In the
YST portion, however, the 1p deletions and/or numeric chromosome chang
es were present. Surprisingly, deletions at the short arm of chromosom
e 1, del(1)(p36.3), were frequently observed in malignant pediatric GC
Ts and were the sole abnormality detected in one case. The 1p36 deleti
ons were present not only in all stage IV ECs and YSTs investigated, b
ut occurred also in some stage I YSTs and were always absent in the re
latively benign TDs. Our results indicate that deletions at 1p36 play
a role in the differentiation capacity and may serve as a prognostic m
arker in pediatric GCTs.