Jaws and branchial arches together are a basic, segmented feature of t
he vertebrate head, Seven arches develop in the zebrafish embryo (Dani
o rerio), derived largely from neural crest cells that form the cartil
aginous skeleton, In this and the following paper we describe the phen
otypes of 109 arch mutants, focusing here on three classes that affect
the posterior pharyngeal arches, including the hyoid and five gill-be
aring arches, In lockjaw, the hyoid arch is strongly reduced and subse
ts of branchial arches do not develop, Mutants of a large second class
, designated the flathead group, lack several adjacent branchial arche
s and their associated cartilages. Five alleles at the flathead locus
all lead to larvae that lack arches 4-6, Among 34 other flathead group
members complementation tests are incomplete, but at least six unique
phenotypes can be distinguished, These all delete continuous stretche
s of adjacent branchial arches and unpaired cartilages in the ventral
midline, Many show cell death in the midbrain, from which some neural
crest precursors of the arches originate, lockjaw and a few mutants in
the flathead group, including pistachio, affect both jaw cartilage an
d pigmentation, reflecting essential functions of these genes in at le
ast two neural crest lineages, Mutants of a third class, including box
er, dackel and pincher, affect pectoral fins and axonal trajectories i
n the brain, as well as the arches. Their skeletal phenotypes suggest
that they disrupt cartilage morphogenesis in all arches, Our results s
uggest that there are sets of genes that: (1) specify neural crest cel
ls in groups of adjacent head segments, and (2) function in common gen
etic pathways in a variety of tissues including the brain, pectoral fi
ns and pigment cells as well as pharyngeal arches.