To identify potential pattern control and cell determination and/or di
fferentiation genes in the freshwater planarian Dugesial (G.) tigrina,
we searched for homeobox genes of different types in the genome of th
is primitive metazoan. We applied two basic approaches: 1) Screening t
he cDNA library with degenerate oligonucleotides corresponding to the
most conserved amino acid sequence from helix-3 of the homeodomain of
each family; and 2) PCR amplification of genomic DNA or cDNA, using tw
o sets of degenerated oligonucleotides corresponding to helices 1 and
3 of the homeodomain or two specific domains of the POU family. Using
the first strategy we have identified and characterized two tissue-spe
cific cell determination and/or differentiation NK-type homeobox genes
. Using the second strategy we have identified several homeobox genes
that belong to the HOM/Hox, paired (prd) or POU families.