1. We hypothesized that the fishery management practices of toxaphene
application and trout stocking would affect non-target organisms in la
kes. Because these practices were rarely monitored in the past, cladoc
eran and algal assemblages were quantified in sediment cores from two
lakes treated 30+ years ago to determine the long-term response of org
anisms near the base of the food chain. 2. Chydorids were remarkably r
esistant over the short term (a few years) in both the oligotrophic an
d eutrophic lakes despite toxaphene treatments that extirpated native
fish and other invertebrates. In the oligotrophic lake (Annette Lake),
six chydorid taxa were less abundant in the years following treatment
, although no loss of species richness was detected. In the eutrophic
lake (Chatwin Lake), the dominant Chydorus cf. sphaericus declined coi
ncident with toxaphene treatment, but longer-term declines of all taxa
were probably related to food web or other changes rather than to tox
aphene toxicity. Cause and effect coupling was complicated by the fact
that many chydorids were present at low concentrations in some pretre
atment samples. 3. The algal communities (as fossil pigments) responde
d to treatment differently in the two lakes. In the oligotrophic lake,
planktonic diatoms, dinoflagellates and chlorophytes were replaced as
dominants by deep-water or benthic blooming cryptophytes, chrysophyte
s and cyanobacteria. This shift occurred along with increases in large
daphnids and the 'grazing indicator', pheophorbide a. While both lake
s appear to have had enhanced pigment preservation following treatment
, the eutrophic lake encountered few long-term changes in its fossil p
igment assemblage. Redundancy analysis estimated that the presence or
absence of stocked trout explained much of the variation in the algal
assemblages, particularly in the oligotrophic lake. 4. Toxaphene remai
ned elevated in profundal sediments from these lakes 30 and 35 years a
fter treatment.