M. Odelius et al., A MODEL GLYCOSIDIC LINKAGE - AN AB-INITIO GEOMETRY OPTIMIZATION STUDYOF 2-CYCLOHEXOXYTETRAHYDROPYRAN, Journal of physical chemistry, 99(33), 1995, pp. 12686-12692
Quantum mechanical ab initio calculations have been performed to study
regions close to minimum energy conformations of a pseudo-disaccharid
e, viz., 2-cyclohexoxytetrahydropyran. Dunning's double-zeta basis set
was used for most of the calculations. The global minimum was obtaine
d for the axial conformer, and a local minimum for the axial form was
also observed at 0.5 kcal/mol above the global minimum. The equatorial
form showed local energy minima for two conformers about 2.5 kcal/mol
above the global minimum. Analysis of the effect of electron correlat
ion on the geometry optimization was also performed on the MP2 level o
f approximation using the DZ basis set. Geometry optimization calculat
ions at various values of the psi dihedral angle were performed with t
he phi dihedral angle restrained to the staggered conformation where t
he exoanomeric effect is contributing to energy stabilization. Barrier
heights between the axial conformers and between the equatorial confo
rmers, respectively, were well below kT at room temperature as identif
ied from the ab initio calculations, thus indicating a conformationall
y averaged low-energy region. The barrier for the full rotation of the
psi dihedral angle is estimated to be ca 4-5 kcal/mol. The relative e
nergies and the geometries obtained from the calculations at the Hartr
ee-Fock level of approximation were compared to those from MM3 calcula
tions. The optimal conformations calculated with the ab initio and MM3
methods, respectively, were similar for the global minimum, whereas s
ignificant differences were observed for the phi and psi dihedral angl
es as well as in relative energies for low-energy conformers. The valu
es of the psi dihedral angle in the optimal geometries were closer tog
ether when calculated by the ab initio method than obtained from MM3 c
alculations, thus indicating a more narrow low-energy region.