We have isolated 20 different human endogenous retroviruses (ERV) rela
ted to ERV3, Hsrirt and Humer 4-1. Phylogeny and the presence of these
ERV among different primates were determined by computer and Southern
blot analyses, Preferential localization of ERV to the human, chimpan
zee and orangutan Y chromosomes among the low-copy-number ERV is demon
strated. The reason for this accumulation of ERV on the strongly heter
ochromatic Y chromosome is probably mediated by (i) the absence of rec
ombination of the Y chromosome that makes it more difficult for sequen
ces to be lost, and (ii) integration of retroviruses in heterochromati
c regions is less harmful to the organism. If ERV located on the Y chr
omosome are transcribed and translated to peptides, such peptides coul
d be potential HY-antigens.