Organic acid analysis is a powerful technique in the diagnosis of inbo
rn errors of metabolism. Since the development of the technique over t
wenty-five years ago, it has evolved into a sophisticated and powerful
method and is an essential tool in the diagnosis of the organic acidu
rias. The chemistry and biochemistry of organic acids, as well as samp
le preparation, instrumentation, and many aspects of the more commonly
used methods for the analysis of these compounds, are reviewed. The b
iochemical and clinical characteristics of each of the primary organic
acidurias are described. In addition, the various noninherited causes
of secondary organic acidurias that lead to the excretion of abnormal
organic acids are also described, and ways of differentiating primary
from secondary causes are discussed.