DNASTAT - A PASCAL UNIT FOR THE STATISTICAL-ANALYSIS OF DNA AND PROTEIN SEQUENCES

DNASTAT is a collection of Pascal routines for researchers who develop their own application programs for statistical analysis of DNA and pr otein sequences. Dynamic and file-based data structures allow users to process sets of sequences by simple loop control without limitations on the number of sequences and their individual sizes. This frees the programmer from potentially error-prone tasks like dynamic memory allo cation and controlling array sizes. Sequences can be stored in databas es along with biological and statistical attributes. Individual sequen ces can be accessed by column name and row number as with spreadsheets . DNASTAT allows large sets of sequences to be processed using a PC wi th standard configuration. Its small size, simplicity and free availab ility make it attractive to students of mathematical biology. Use of D NASTAT is illustrated by two sample programs that generate a database of coding regions from the GenBank entry of the tobacco chloroplast ge nome. A version of DNASTAT written in ANSI-C for PCs and Unix workstat ions is also available.