It is often proposed that the ability of diploids to mask deleterious
mutations lends to an evolutionary advantage over haploidy. In this pa
per, we studied the evolution of the relative duration of haploid and
diploid phases using a model of recurrent deleterious mutations across
the entire genome. We found that a completely diploid life cycle is f
avored under biologically reasonable conditions, even when prolonging
the diploid phase reduces a populations mean fitness. A haploid cycle
is favored when there is complete linkage throughout the genome or whe
n mutations are either highly deleterious or partially dominant. These
results hold when loci interact multiplicatively and for synergistic
epistasis. The strength of selection generated on the life cycle can b
e substantial because of the cumulative effect of selection against mu
tations across many loci, We did nor find conditions that support cycl
es that retain both phases, such as those found in some plants and alg
ae. Thus, selection against deleterious mutations may be an important
force in the evolution of life cycles but may not be sufficient to exp
lain all the patterns of life cycles seen in nature.