With experience and a battery of special histologic stains, many funga
l and related pathogens can be rapidly and accurately identified by ex
amining routinely processed tissue sections that contain the etiologic
agent. When needed, immunofluorescence adds accuracy and specificity
to the histopathologic diagnosis, and it can be used to identify most
of the common fungal pathogens in smears and deparaffinized sections o
f formalin fixed tissue. Histologic and immunohistologic studies are i
nvaluable for the early recognition of fungal infections and for the d
irect confirmation of tissue invasion by fungi that are either members
of the normal body microflora or are suspected of being environmental
contaminants when isolated in culture. These studies also permit diff
erentiation of various infectious diseases that sometimes occur in the
immunocompromised host. Accurate histologic distinction between diffe
rent fungi is often crucial, because it may have important therapeutic
implications.