Expression of the Epstein-Barr virus (EBV) EBNA-1 protein within EBV-p
ositive tumor cells and subpopulations of latently infected B lymphocy
tes in vivo is mediated by the promoter Qp. Previous studies have esta
blished that Qp is a TATA-less promoter whose activation requires only
proximal regulatory elements and that it is negatively autoregulated
through two EBNA-1 binding sites downstream of the transcription initi
ation sites. The objective of this study was to better define the prop
erties of an essential positive regulatory element (QRE-2) adjacent to
a major transcription start site of Qp and to evaluate the contributi
ons of other potential regulatory elements proximal to the Qp start si
te. Using DNA affinity purification and UV cross-linking, we have iden
tified the QRE-2-binding protein as a single polypeptide of similar to
40 kDa., The DNA-binding properties of this protein are clearly disti
nct from those of the TATA-binding protein, suggesting that in the abs
ence of a TATA box, QRE-2 may function as an initiator element to dire
ct assembly of TFIID near the transcription start site. ?Mutational an
alysis of potential regulatory elements, furthermore, indicated that t
he putative E2F binding sites within the EBNA-1 binding domain can exe
rt a positive influence on Qp that is EBNA-1 independent, suggesting t
hat these regulatory elements play. an additional if not different rol
e in Qp regulation than previously proposed. A model for the regulatio
n of Qp consistent with the current and previous findings which provid
es for a simple but efficient mechanism of ensuring the EBNA-1 express
ion necessary to sustain long-term latency is presented.