Mn. Liang et al., KINETICS OF THE REACTIONS BETWEEN THE INVARIANT CHAIN (85-99) PEPTIDEAND PROTEINS OF THE MURINE CLASS-II MHC, International immunology, 7(9), 1995, pp. 1397-1404
The region comprising residues 83-107 of the extracytoplasmic domain o
f the class II MHC-associated invariant chain protein is essential for
its functional interaction with MHC proteins. A nested set of peptide
s that encompass this region, designated the class II invariant chain-
derived peptides (CLIP), bind to many MHC proteins and inhibit the bin
ding of antigenic peptides, The kinetics of the reactions between CUP
and five different murine class ii MHC proteins have been determined,
specificity of CLIP binding was confirmed by competition with antigeni
c peptides, Large differences in the reaction rates were observed, For
example, half-times of dissociation ranged from 4.4 min to 17.5 h, a
> 200-fold difference, These results demonstrate that CLIP bind to MHC
heterodimers at a site that involves the polymorphic residues, These
data support the hypothesis that the CLIP binding site is within the p
eptide binding groove, It is further suggested that these differences
in kinetic stabilities of CLIP-MHC protein complexes might affect the
diversity of endogenous peptides bound to class II MHC proteins.