Microbial diversity and activity were studied in a stratified basin of
Mariager Fjord, Denmark in August 1994. The basin is about 30 m deep
and the lower half of the water column is anoxic and sulphidic. The hy
drographical and biological features of the system are described. Base
d on chemical gradient profiles and measurements of process rates, we
found that the relative importance of sulphate reduction, denitrificat
ion and methanogenesis in terms of anaerobic terminal mineralisation w
as about 5:1:0.4. It is possible, however, that methanogenesis is unde
restimated because an unknown fraction of the methane production escap
ed by ebullition. It was estimated that 10-15% of the net primary prod
uction is mineralised anaerobically. The mean residence time of methan
e, sulphide and ammonia beneath the chemocline is within the range 1.6
-2.3 yrs. Chemolithotrophic production in the chemocline (sulphide oxi
dation and nitrification) accounted for about 3% of the net primary pr
oduction of the system. Methane was oxidised (anaerobically or aerobic
ally) throughout a large part of the water column, but most escaped to
the atmosphere. The fjord has an impoverished zooplankton. This may b
e due to the sulphidic deep water which will be lethal to sedimenting
eggs. The protozoan biota were studied quantitatively and qualitativel
y. Eighty-one species of protozoa were identified in the water column;
of these, 37 were ciliates and the remainder were flagellates or rhiz
opods. Only one new species of ciliate was found. All flagellates from
the aerobic zone could be assigned a generic name. In contrast, the m
icroaerobic and especially the anaerobic parts of the water column rev
ealed about ten undescribed flagellates (three of which are formally d
escribed), suggesting that the smaller protists of anaerobic habitats
are still poorly known. Three relatively distinct protistan assemblage
s could be identified, being associated with the oxic water column, th
e microaerobic zone around the chemocline, and the anoxic zone, respec
tively.