Bl. Holian et al., THERMOSTATTED MOLECULAR-DYNAMICS - HOW TO AVOID THE TODA DEMON HIDDENIN NOSE-HOOVER DYNAMICS, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, 52(3), 1995, pp. 2338-2347
The Nose-Hoover thermostat, which is often used in the hope of modifyi
ng molecular dynamics trajectories in order to achieve canonical-ensem
ble averages, has hidden in it a Toda ''demon,'' which can give rise t
o unwanted, noncanonical undulations in the instantaneous kinetic temp
erature. We show how these long-lived oscillations arise from insuffic
ient coupling of the thermostat to the atoms, and give straightforward
, practical procedures for avoiding this weak-coupling pathology in is
othermal molecular dynamics simulations.