The full process of fatty acid methyl ester (FAME) analysis consists o
f esterification of lipids, and of injection, separation, identificati
on and quantitation of the FAMEs. In order for the required accuracy a
nd precision to be attained, each of these steps has to be optimized.
Esterification of lipids can be carried out with several reagents base
d on acid-catalysed or base-catalysed reactions. The advantages and di
sadvantages of these reagents are discussed. The most critical step in
the gas chromatographic analysis of FAMEs is sample introduction. The
classical split injection technique, which is the most widely used te
chnique in the analysis of FAMEs, has the potential disadvantage of bo
iling-point-dependent sample discrimination. Cold injection of the sam
ple, either on-column or by programmed-temperature vaporization, does
not present this problem and should therefore be preferred. Modern, co
mmercially available fused-silica capillary columns offer excellent se
paration of FAMEs from biological samples. Very polar stationary phase
s give excellent separation of all FAMEs but have relatively low therm
al stability, resulting in long retention times. Non-polar phases have
a much greater thermal stability but inferior selectivity. For many a
nalyses, phases of intermediate polarity, which combine the advantages
of a relatively high resolution capability with relatively high therm
al stability, are the most suitable. FAMEs can be identified by compar
ison of their retention times with those of individual purified standa
rds or secondary standards based on lipids that have been well charact
erized in literature. Relative retention times and equivalent chain-le
ngth values also provide useful information. FAMEs can be quantitated
by peak areas via calibration factors, and absolute concentrations can
be determined by adding an internal standard. Among numerous applicat
ions in biomedical research, the analysis of fatty acids from body tis
sues may contribute to the understanding of the link between the dieta
ry intake of fatty acids and the diseases with which these acids are a
ssociated.