Lake Baikal is the world's largest freshwater lake and is internationa
lly famous for its rich and largely endemic biota. Concern about this
unique ecosystem has grown since the late 1970s but whether recent bio
logical changes result from natural fluctuations or pollution is uncle
ar. One way of discriminating between these processes is to examine re
cords of recent change in radiometrically dated deep-water sediment co
res. Here we use high-resolution diatom analysis of one core to show t
hat abundances have not changed significantly over recent decades. By
contrast, we demonstrate that the lake is contaminated by atmospheric
pollutants and has experienced a small qualitative change in soil deri
ved magnetic minerals. Sedimentary lead concentrations show an increas
ing trend in the c. 150-year core sequence and spheroidal carbonaceous
particles (SCPs) contaminate post-1930 sediment. Although we provide
no evidence that twentieth-century pollution has affected the endemic
planktonic diatoms in the central western region of southern Lake Baik
al, longer trends in species abundances could be related to naturally
occurring climatic cycles or to global warming.