R. Gentry et al., SURFACE-MEDIATED ENZYMATIC-REACTIONS - SIMULATIONS OF TISSUE FACTOR ACTIVATION OF FACTOR-X ON A LIPID SURFACE, Biophysical journal, 69(2), 1995, pp. 362-371
Blood coagulation proceeds via reactions in which zymogen coagulation
factors are activated to proteases. An essential step is the activatio
n of factor X by a complex of tissue factor and factor VIIa. This comp
lex usually is studied using phospholipid vesicles into which tissue f
actor is inserted. Because factor X exists free in solution and bound
to the lipid-surface, it is difficult to establish experimentally the
kinetic contribution of surfaces. We therefore developed a stochastic
model to simulate such reactions and generate initial velocity data fr
om which Michaelis-Menten parameters are estimated. Simulated K-m valu
es decrease slightly when substrate binding to lipid is increased and
by a factor of four when the rates of surface diffusion are increased
to that of fluid phase-diffusion. Simulations with various size planar
surfaces established an enzyme capture radius of 32-64 nm. Simulation
s with different modes of enzyme-substrate complex assembly show that
if the true substrate is lipid-bound, under certain conditions, the tr
ue k(cat) is not measured; rather, the product ''leaving rate'' from t
he complex is the rate-limiting step that is measured as substrate is
taken to infinity. This model is applicable to any surface-bound enzym
e reaction.