Contribution of the modern mass spectrometry to the structure determin
ation of cyclic peptides is explained with compounds belonging to a ph
armaceuticallly important group of cyclosporins. In addition to the de
termination of molecular weight and elemental composition of molecule,
also the presence of individual amino acids may be estimated. Their s
equence can be derived from the daughter ion mass spectra of the proto
nated molecule obtained in a tandem experiment. Comparison of the char
acteristic fragmentation of immonium ions in the spectra of peptides a
nd free amino acids makes possible to distinguish even isobaric amino
acids one from another. Examples of use of the tandem mass spectrometr
y in the analysis of mixtures are presented. Coupling of high-performa
nce liquid chromatography and mass spectrometry utilizing fast-atom bo
mbardment, electrospray, and atmospheric pressure chemical ionization,
is discussed. The quantitative analysis of cyclosporins in biological
samples using laser desorption or fast-ion bombardment with time-of-f
light ion analysis surpasses immunologic assays in selectivity and fas
t performance.