A novel gene, roaA (ribosomal operon-associated gene), encoding a pote
ntial RNA-binding protein has been identified in the rp123 ribosomal p
rotein operon of the Euglena gracilis chloroplast genome. The roaA gen
e is interrupted by one group II and three group II introns. Introns 1
and 2 of roaA can be interpreted as a twin tron, formed from the inse
rtion of a group II intron into the 5' splice site of a group III intr
on. Alternative splicing of the group Ill intron results in two distin
ct transcripts encoding proteins of 516 and 514 amino acids. Group Ill
introns may play a role in the generation of alternatively spliced tr
anscripts.