The population structure of the blast pathogen, Pyricularia grisea, wa
s analyzed at two field sites used for evaluating blast resistance in
rice. During 1992, 1,516 monoconidial isolates of the pathogen were co
llected from 38 rice cultivars and lines from the blast nursery of the
international Rice Research Institute (IRRI-BN) and from the upland s
creening site at Cavinti. Each isolate was subjected to DNA fingerprin
ting and phenetic analysis using the probe MGR586. Nine lineages were
detected at Cavinti during the wet season. Although the same four line
ages were collected from the IRRI-BN during the dry and wet seasons, t
he relative abundance of lineages differed in the two collections. Whi
le the lineage diversity was greater at Cavinti than at the IRRI-BN in
either season, the haplotypic diversities of the collections were sim
ilar. Generic differentiation and chi-square analysis indicated that p
opulations of the fungus were differentiated geographically and tempor
ally. The largest proportion of differentiation was attributable to ho
st selection (G(ST) = 0.39). To assess how well field infection reflec
ted compatibility, a subset of isolates was inoculated on their hosts
of origin. Isolates were often unable to reinfect their hosts of origi
n, especially isolates belonging to the dominant pathogen lineage and
when collected from young seedlings and those with low diseased leaf a
rea. Our results provided insight into pathogen population structure,
and provided useful information for rice improvement and management.