Z. Kaya et Db. Neale, UTILITY OF RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) MARKERS FOR LINKAGE MAPPING IN TURKISH RED PINE (PINUS-BRUTIA TEN), Silvae Genetica, 44(2-3), 1995, pp. 110-116
We have applied the random amplified polymorphic DNA (RAPD) marker sys
tem to estimate linkage relationships in Pinus brutia TEN.. We used DN
A samples from 30 haploid seed megagametophytes from each of 4 mother
trees. Ninety-five 10-base oligonucleotide primers were evaluated and
34 revealed at least one polymorphic RAPD locus. The number of segrega
ting RAPD loci per polymorphic primer varied from 2.32 to 3.25, but wh
en segregating loci per tested primer was considered it was low, rangi
ng on the average, from 0.28 in tree 4 to 0.59 in tree 1. Based on the
RAPD loci segregating in 1:1 ratio, genetic Linkage groups formed fro
m 6 for genotype-l (total map distance=163.91 cM) to 13 for genotype-3
(total map distance=511.2 cM). It was also found that a number of seg
regating loci in all 4 genotypes (ranging from 14 to 21) could not be
assigned into any of the constructed linkage groups. It was difficult
to compare linkage groups among the genotypes since most of RAPD loci
segregating in one genotype were not found in others. Thus, the linkag
e map provided very little information on the genomic organization of
RAPD markers at the species level. The utility of RAPD markers in fore
st genetics is also discussed in the paper.