A map of human chromosome 3 which integrates both physical and genetic
data has been developed from the fusion of two large collections of m
arkers and corresponding yeast artificial chromosome (YAC) clones. The
map contains 972 megabase-sized YACs identified with 593 primary mark
ers, of which 162 are highly polymorphic sequence-tagged sites (STSs)
and form a closely spaced genetic linkage map; the remaining markers a
re hybridization-based. Chromosome 3 is now represented by 24 large YA
C contigs whose order and orientation is largely known. The map genera
ted by fusion of these hybridization- and STS-based datasets covers ab
out 80% (over 160 megabases) of the chromosome and will provide the fo
undation necessary for vapid development of a detailed genetic underst
anding for this large autosome.