An intracellular carbonic anhydrase (CA; EC 4.2.1.1) was purified to h
omogeneity from a mutant strain of Chlamydomonas reinhardtii (CW 92) l
acking a cell wall. Intact cells were washed to remove periplasmic CA
and were lysed and fractionated into soluble and membrane fractions by
sedimentation. All of the CA activity sedimented with the membrane fr
action and was dissociated by treatment with a buffer containing 200 m
M KCI. Solubilized proteins were fractionated by ammonium sulfate prec
ipitation, anionic exchange chromatography, and hydrophobic interactio
n chromatography. The resulting fraction had a specific activity of 12
60 Wilbur-Anderson units/mg protein and was inhibited by acetazolamide
(50% inhibition concentration, 12 nM). Final purification was accompl
ished by the specific absorption of the enzyme to a Centricon-10 micro
concentrator filter. A single, 29.5-kD polypeptide was eluted from the
filter with sodium dodecyl sulfate-polyacrylamide gel electrophoresis
sample buffer, and a 1.5 M ammonium sulfate eluate contained CA activ
ity. In comparison with human CA isoenzyme II, the N-terminal and inte
rnal amino acid sequences from the 29.5-kD polypeptide were 40% identi
cal with the N-terminal region and 67% identical with an internal cons
erved region. Based on this evidence, we postulate that the 29.5-kD po
lypeptide is an internal CA in C. reinhardtii and that the enzyme is c
losely related to the alpha-type CAs observed in animal species.