The PiGMaP and USDA porcine linkage maps for chromosomes 2 and 5 have
been aligned by typing five USDA microsatellite markers from chromosom
es 2 and 4 from chromosome 5 on the PiGMaP reference families. The mar
kers in the two maps can be successfully aligned except for Sw395 on c
hromosome a, which is the endmost marker in the USDA map 22 cM remote
from the next marker, but which maps to a more central location and in
the same position as Sw776 in the PiGMaP families. The mapping of fou
r additional chromosome 5 markers has enabled amalgamation of the two
previously separate PiGMaP linkage groups assigned to chromosome 5 and
has more than doubled the length of its map. The USDA map of chromoso
me 5 is considerably shorter than the revised PiGMaP version, particul
arly between DAGK and Sw1071, where the corresponding lengths are 9 cM
versus 33 cM.