Alignment of the primary structures of the hydrozoan photoproteins, ae
quorin, mitrocomin, clytin and obelin showed very strong amino acid se
quence identities. The Ca2+-binding sites of the proteins were found t
o be highly conserved. The Ca2+-binding sites were also homologous to
the Ca2+-binding sites of other Ca2+-binding proteins. However, aequor
in, mitrocomin, clytin and obelin differed from other Ca2+-binding pro
teins in that they contained a relatively large number of cysteine, tr
yptophan, histidine, proline and tyrosine residues, suggesting that th
ese residues may have evolved as part of the light-emitting mechanism.
Construction of a phylogenetic tree showed that aequorin, mitrocomin,
clytin and obelin form a closely related group of proteins.