The preparation of a peptide-oligonucleotide hybrid with an N-acylphos
phoramidate linkage has been carried out by (i) phosphitylation of the
C-terminal carboxamide of a protected peptide by reaction with a chlo
roalkoxy(dialkylamino)phosphine in the presence of a base, (ii) coupli
ng of the resulting N-acylphosphorodiamidite onto an oligonucleotide-r
esin followed by oxidation, and (iii) deprotection and cleavage under
basic conditions. The synthetic method takes advantage of the unpreced
ented reaction of primary carboxamides with electrophilic P-III specie
s and takes place under mild conditions which are compatible with the
stability of both the peptide and the oligonucleotide components.