We have sequenced the 5' untranslated region of the orthologous FMR1 g
ene from 44 species of mammals. The CGG repeat is present in each spec
ies, suggesting conservation of the repeat over 150 million years of m
ammalian radiation. Most mammals possess small contiguous repeats (mea
n number of repeats = 8.0 +/- 0.8), but, in primates, the repeats are
larger (mean= 20.0 +/- 2.3) and more highly interrupted. Parsimony ana
lysis predicts that enlargement of the FMR1 CGG repeat beyond 20 tripl
ets has occurred in three different primate lineages. In man and goril
la, AGG interruptions occur with higher-order periodicity, suggesting
that historical enlargement has involved incremental and vectorial add
ition of larger arrays demarcated by an interruption. Our data suggest
that replication slippage and unequal crossing over have been operati
ve during the evolution of this repeat.